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1

Proofreading dynamics of a processive DNA polymerase

Ibarra, Borja, Chemla, Yann R, Plyasunov, Sergey, Smith, Steven B, Lázaro, José M, Salas, Margarita, Bustamante, Carlos

Journal:

The EMBO Journal

Year:

2009

Language:

english

File:

PDF, 928 KB

english, 2009

2

Substrate interactions and promiscuity in a viral DNA packaging motor

Aathavan, K., Politzer, Adam T., Kaplan, Ariel, Moffitt, Jeffrey R., Chemla, Yann R., Grimes, Shelley, Jardine, Paul J., Anderson, Dwight L., Bustamante, Carlos

Journal:

Year:

2009

Language:

english

File:

PDF, 2.30 MB

english, 2009

3

Ultrahigh-resolution optical trap with single-fluorophore sensitivity

Comstock, Matthew J, Ha, Taekjip, Chemla, Yann R

Journal:

Year:

2011

Language:

english

File:

PDF, 1.21 MB

english, 2011

4

Recent Advances in Optical Tweezers

Moffitt, Jeffrey R., Chemla, Yann R., Smith, Steven B., Bustamante, Carlos

Journal:

Annual Review of Biochemistry

Year:

2008

Language:

english

File:

PDF, 551 KB

english, 2008

5

M ECHANICAL P ROCESSES IN B IOCHEMISTRY

Bustamante, Carlos, Chemla, Yann R., Forde, Nancy R., Izhaky, David

Journal:

Annual Review of Biochemistry

Year:

2004

Language:

english

File:

PDF, 617 KB

english, 2004

6

Intersubunit coordination in a homomeric ring ATPase

Moffitt, Jeffrey R., Chemla, Yann R., Aathavan, K., Grimes, Shelley, Jardine, Paul J., Anderson, Dwight L., Bustamante, Carlos

Journal:

Year:

2009

Language:

english

File:

PDF, 627 KB

english, 2009

7

High-resolution, long-term characterization of bacterial motility using optical tweezers

Min, Taejin L, Mears, Patrick J, Chubiz, Lon M, Rao, Christopher V, Golding, Ido, Chemla, Yann R

Journal:

Year:

2009

Language:

english

File:

PDF, 799 KB

english, 2009

8

Mechanism of Force Generation of a Viral DNA Packaging Motor

Yann R. Chemla, K. Aathavan, Jens Michaelis, Shelley Grimes, Paul J. Jardine, Dwight L. Anderson, Carlos Bustamante

Journal:

Year:

2005

Language:

english

File:

PDF, 502 KB

english, 2005

9

High-resolution Optical Trap Measurements Of A Ringed DNA Translocase

Chemla, Yann R., Moffitt, Jeffrey R., Aathavan, K., Grimes, Shelley, Jardine, Paul J., Anderson, Dwight L., Bustamante, Carlos

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 36 KB

english, 2009

10

Characterization of Photoactivated Singlet Oxygen Damage in Single-Molecule Optical Trap Experiments

Landry, Markita P., McCall, Patrick M., Qi, Zhi, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 710 KB

english, 2009

11

Displaced Strand Regulation of Facxpd Helicase Activity

Qi, Zhi, Pugh, Robert A., Spies, Maria, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 38 KB

english, 2011

12

In vivo optical trapping indicates kinesin’s stall force is reduced by dynein during intracellular transport

Blehm, Benjamin H., Schroer, Trina A., Trybus, Kathleen M., Chemla, Yann R., Selvin, Paul R.

Journal:

Proceedings of the National Academy of Sciences

Year:

2013

Language:

english

File:

PDF, 603 KB

english, 2013

13

Exact Solutions for Kinetic Models of Macromolecular Dynamics †

Chemla, Yann R., Moffitt, Jeffrey R., Bustamante, Carlos

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 330 KB

english, 2008

14

Revealing the base pair stepping dynamics of nucleic acid motor proteins with optical traps

Chemla, Yann R.

Journal:

Physical Chemistry Chemical Physics

Year:

2010

Language:

english

File:

PDF, 1.74 MB

english, 2010

15

Single Molecule Mechano-Memory

Li, Isaac T.S., Ha, Taekjip, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 37 KB

english, 2014

16

The Homopentameric Ring ATPase Motor of the Bacteriophage T4 Tolerates One Inactive Subunit

Kottadiel, Vishal I., Dai, Li, Rao, Venigalla B., Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 37 KB

english, 2014

17

Simultaneous High-Resolution Optical Trapping and Single Molecule Fluorescence Measurements of the UvrD Helicase: DNA Motor Protein Structure and Function Observed Simultaneously

Comstock, Matthew J., Jia, Haifeng, Lohman, Timothy M., Ha, Taekjip, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 37 KB

english, 2013

18

Novel DNA Target Site Search Mechanism for Sequence-Specific DNA Binding Proteins

Landry, Markita P., Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 52 KB

english, 2011

19

Using Optical Traps to Study Bacterial Motility and Chemotaxis at the Single-Cell Level

Mears, Patrick J., Min, Taejin L., Golding, Ido, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 75 KB

english, 2012

20

In Vivo Organelle Tracking, Calibration, and Force Measurement with an Optical Trap

Blehm, Benjamin H., Chemla, Yann R., Selvin, Paul R.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 36 KB

english, 2010

21

Regulation of XPD Helicase by the Single-Stranded DNA Binding Protein RPA2

Qi, Zhi, Honda, Masayoshi, Spies, Maria, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 33 KB

english, 2013

22

FORTHCOMING ISSUES

Qi, Zhi, Honda, Masayoshi, Spies, Maria, Chemla, Yann R.

Journal:

Obstetrics and Gynecology Clinics of North America

Year:

2003

File:

PDF, 19 KB

2003

23

Single Molecule Studies of the Recognition Sequence Finding Mechanism of Protelomerase Telk

Landry, Markita P., Huang, Wai Mun, Yanagida, Toshio, Robert Chemla, Yann

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 42 KB

english, 2010

24

Constructing an Energy Landscape for the Hybridization of Short Oligonucleotides

Whitley, Kevin, Comstock, Matthew J., Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 62 KB

english, 2013

25

High Resolution, Long Term Characterization of Bacterial Motility Using Optical Tweezers

Min, Taejin L., Mears, Patrick J., Chubiz, Lon M., Rao, Christopher V., Golding, Ido, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 64 KB

english, 2010

26

Single Molecule Fluorescence and Optical Traps Applied to Molecular Motors: Two can do it better than One

Selvin, Paul R., Blehm, Ben H., Tonks-Hoffman, Mindy, Trybus, Kathleen M., Schroer, Trina A., Berger, Christopher L., Yildiz, Ahmet, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 34 KB

english, 2013

27

Motor-Substrate Interactions in a Ring ATPase

Kaplan, Ariel, Aathavan, K., Politzer, Adam, Moffitt, Jeffrey, Chemla, Yann R., Grimes, Shelley, Jardine, Paul J., Anderson, Dwight L., Bustamante, Carlos J.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

28

Partial Unwrapping of SSB from SsDNA Facilitates RecA Filament Formation

Suksombat, Sukrit, Kozlov, Alexander G., Lohman, Timothy M., Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 62 KB

english, 2014

29

E.coli SSB Under Tension

Khafizov, Rustem G., Kozlov, Alexander G., Lohman, Timothy M., Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 38 KB

english, 2010

30

A Comparative Study of Multivariate and Univariate Hidden Markov Modelings in Time-Binned Single-Molecule FRET Data Analysis

Liu, Yang, Park, Jeehae, Dahmen, Karin A., Chemla, Yann R., Ha, Taekjip

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 4.40 MB

english, 2010

31

Mechanistic constraints from the substrate concentration dependence of enzymatic fluctuations

Jeffrey R. Moffitt, Yann R. Chemla and Carlos Bustamante

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.25 MB

english, 2010

32

Direct Observation of Structure-Function Relationships in Nucleic Acid Processing Enzymes

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 36 KB

english, 2015

33

SPIE Proceedings [SPIE SPIE Astronomical Telescopes + Instrumentation - Montréal, Quebec, Canada (Sunday 22 June 2014)] Adaptive Optics Systems IV - Optical design of the relay optics for the MICADO SCAO system

Marchetti, Enrico, Close, Laird M., Véran, Jean-Pierre, Cohen, Mathieu, Chemla, Fanny, Buey, Tristan, Gendron, Éric, Hubert, Zoltan, Hartl, Michael, Clénet, Yann, Davies, Richard

Year:

2014

Language:

english

File:

PDF, 559 KB

english, 2014

34

SPIE Proceedings [SPIE SPIE Astronomical Telescopes + Instrumentation - Montréal, Quebec, Canada (Sunday 22 June 2014)] Adaptive Optics Systems IV - Overview of the MICADO SCAO system

Marchetti, Enrico, Close, Laird M., Véran, Jean-Pierre, Clénet, Yann, Buey, Tristan M., Rousset, Gérard, Cohen, Mathieu, Feautrier, Philippe, Gendron, Eric, Hubert, Zoltan, Chemla, Fanny, Gratadour, D

Year:

2014

Language:

english

File:

PDF, 4.75 MB

english, 2014

35

Defining Single Molecular Forces Required for Notch Activation Using Nano Yoyo

Chowdhury, Farhan, Li, Isaac T. S., Ngo, Thuy T. M., Leslie, Benjamin J., Kim, Byoung Choul, Sokoloski, Joshua E., Weiland, Elizabeth, Wang, Xuefeng, Chemla, Yann R., Lohman, Timothy M., Ha, Taekjip

Journal:

Year:

2016

Language:

english

File:

PDF, 1.41 MB

english, 2016

36

Tracking Rotation during Leukocyte Rolling Reveals Asymmetric Adhesion Properties

Li, Isaac T.S., Ha, Taekjip, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 41 KB

english, 2015

37

Mechanism of Coordination of the Bacteriophage T4 DNA Packaging Motor Analyzed by Real-Time Single Molecule Fluorescence Assay

Dai, Li, Singh, Digvijay, Vafabakhsh, Reza, Mahalingam, Marthandan, Kottadiel, Vishal, Chemla, Yann, Ha, Taekjip, Rao, Venigalla B.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 44 KB

english, 2016

38

The Effect of Single-Stranded DNA Binding Protein RPA2 on XPD Helicase Processivity

Stekas, Barbara, Qi, Zhi, Honda, Masayoshi, Spies, Maria, Chemla, Yann

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 41 KB

english, 2015

39

Rotation Tracking and Adhesion Footprinting Reveal Asymmetric Rolling Adhesion Mechanism

Li, Isaac T.S., Ha, Taekjip, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 37 KB

english, 2016

40

Direct Observation of the Stepping Behavior of E. Coli UvrD Helicase

Whitley, Kevin D., Comstock, Matthew J., Jia, Haifeng, Lohman, Timothy M., Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 49 KB

english, 2016

41

SPIE Proceedings [SPIE Environmental and Industrial Sensing - Boston, MA (Sunday 28 October 2001)] Advanced Environmental Sensing Technology II - Superconducting quantum interference device detection of magnetically tagged micro-organisms

Grossman, Helene L., Lee, SeungKyun, Myers, Whittier R., Chemla, Yann R., Poon, Yan, Cho, H. M., McDermott, Robert, Stevens, Raymond C., Alper, Mark, Clarke, John, Vo-Dinh, Tuan, Buettgenbach, Stephan

Year:

2002

Language:

english

File:

PDF, 59 KB

english, 2002

42

High-resolution, hybrid optical trapping methods and their application to nucleic acid processing proteins

Chemla, Yann R.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.16 MB

english, 2016

43

SPIE Proceedings [SPIE SPIE Astronomical Telescopes + Instrumentation - Edinburgh, United Kingdom (Sunday 26 June 2016)] Adaptive Optics Systems V - CIAO: wavefront sensors for GRAVITY

Marchetti, Enrico, Close, Laird M., Véran, Jean-Pierre, Scheithauer, Silvia, Brandner, Wolfgang, Deen, Casey, Adler, Tobias, Bonnet, Henri, Bourget, Pierre, Chemla, Fanny, Clenet, Yann, Delplancke, Fr

Year:

2016

Language:

english

File:

PDF, 2.44 MB

english, 2016

44

Constructing modular and universal single molecule tension sensor using protein G to study mechano-sensitive receptors

Wang, Xuefeng, Rahil, Zainab, Li, Isaac T. S., Chowdhury, Farhan, Leckband, Deborah E., Chemla, Yann R., Ha, Taekjip

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.68 MB

english, 2016

45

Mapping Cell Surface Adhesion by Rotation Tracking and Adhesion Footprinting

Li, Isaac T.S., Chemla, Yann R., Ha, Taekjip

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 37 KB

english, 2017

46

Mapping cell surface adhesion by rotation tracking and adhesion footprinting

Li, Isaac T. S., Ha, Taekjip, Chemla, Yann R.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 2.63 MB

english, 2017

47

Energy Taxis in Escherichia Coli on the Single-Cell Level

Perlova, Tatyana, Gruebele, Martin, Chemla, Yann R.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 47 KB

english, 2017

48

Investigating the Enhancement of XPD Helicase Processivity by Single-Stranded Binding Protein RPA2

Stekas, Barbara, Honda, Masayoshi, Spies, Maria, Chemla, Yann

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 42 KB

english, 2017

49

Better biomolecule thermodynamics from kinetics

Girdhar, Kiran, Scott, Gregory, Chemla, Yann R., Gruebele, Martin

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 461 KB

english, 2011

50

Modeling mesoscopic cortical dynamics using a mean-field model of conductance-based networks of adaptive exponential integrate-and-fire neurons

Zerlaut, Yann, Chemla, Sandrine, Chavane, Frederic, Destexhe, Alain

Journal:

Journal of Computational Neuroscience

Year:

2017

Language:

english

File:

PDF, 4.17 MB

english, 2017

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